The SEQC2 epigenomics quality control (EpiQC) study

Jonathan Foox; Jessica Nordlund; Claudia Lalancette; Ting Gong; Michelle Lacey; Samantha Lent; Bradley W. Langhorst; V. K.Chaithanya Ponnaluri; Louise Williams; Karthik Ramaswamy Padmanabhan; Raymond Cavalcante; Anders Lundmark; Daniel Butler; Christopher Mozsary; Justin Gurvitch; John M. Greally; Masako Suzuki; Mark Menor; Masaki Nasu; Alicia Alonso; Caroline Sheridan; Andreas Scherer; Stephen Bruinsma; Gosia Golda; Agata Muszynska; Paweł P. Łabaj; Matthew A. Campbell; Frank Wos; Amanda Raine; Ulrika Liljedahl; Tomas Axelsson; Charles Wang; Zhong Chen; Zhaowei Yang; Jing Li; Xiaopeng Yang; Hongwei Wang; Ari Melnick; Shang Guo; Alexander Blume; Vedran Franke; Inmaculada Ibanez de Caceres; Carlos Rodriguez-Antolin; Rocio Rosas; Justin Wade Davis; Jennifer Ishii; Dalila B. Megherbi; Wenming Xiao; Will Liao; Joshua Xu; Huixiao Hong; Baitang Ning; Weida Tong; Altuna Akalin; Yunliang Wang; Youping Deng; Christopher E. Mason

doi:10.1186/s13059-021-02529-2

The SEQC2 epigenomics quality control (EpiQC) study

Jonathan Foox
, Jessica Nordlund
, Claudia Lalancette
, Ting Gong
, Michelle Lacey
, Samantha Lent
, Bradley W. Langhorst
, V. K.Chaithanya Ponnaluri
, Louise Williams
, Karthik Ramaswamy Padmanabhan
, Raymond Cavalcante
, Anders Lundmark
, Daniel Butler
, Christopher Mozsary
, Justin Gurvitch
, John M. Greally
, Masako Suzuki
, Mark Menor
, Masaki Nasu
, Alicia Alonso

Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł P. Łabaj, Matthew A. Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B. Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, Christopher E. Mason

Center for Genomics

Research output: Contribution to journal › Article › peer-review

Original language	English
Article number	332
Pages (from-to)	332
Journal	Genome Biology
Volume	22
Issue number	1
DOIs	https://doi.org/10.1186/s13059-021-02529-2
State	Published - Dec 2021

ASJC Scopus Subject Areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

Keywords

Sulfites
Epigenomics/methods
5-Methylcytosine
Epigenesis, Genetic
Humans
DNA/genetics
Sequence Analysis, DNA/methods
DNA Methylation
Sequence Alignment
Algorithms
CpG Islands
High-Throughput Nucleotide Sequencing
Whole Genome Sequencing/methods
Epigenome
Genome, Human
Quality Control

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10.1186/s13059-021-02529-2

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Foox, J., Nordlund, J., Lalancette, C., Gong, T., Lacey, M., Lent, S., Langhorst, B. W., Ponnaluri, V. K. C., Williams, L., Padmanabhan, K. R., Cavalcante, R., Lundmark, A., Butler, D., Mozsary, C., Gurvitch, J., Greally, J. M., Suzuki, M., Menor, M., Nasu, M., ... Mason, C. E. (2021). The SEQC2 epigenomics quality control (EpiQC) study. Genome Biology, 22(1), 332. Article 332. https://doi.org/10.1186/s13059-021-02529-2

Foox, J, Nordlund, J, Lalancette, C, Gong, T, Lacey, M, Lent, S, Langhorst, BW, Ponnaluri, VKC, Williams, L, Padmanabhan, KR, Cavalcante, R, Lundmark, A, Butler, D, Mozsary, C, Gurvitch, J, Greally, JM, Suzuki, M, Menor, M, Nasu, M, Alonso, A, Sheridan, C, Scherer, A, Bruinsma, S, Golda, G, Muszynska, A, Łabaj, PP, Campbell, MA, Wos, F, Raine, A, Liljedahl, U, Axelsson, T, Wang, C , Chen, Z, Yang, Z, Li, J, Yang, X, Wang, H, Melnick, A, Guo, S, Blume, A, Franke, V, Ibanez de Caceres, I, Rodriguez-Antolin, C, Rosas, R, Davis, JW, Ishii, J, Megherbi, DB, Xiao, W, Liao, W, Xu, J, Hong, H, Ning, B, Tong, W, Akalin, A, Wang, Y, Deng, Y & Mason, CE 2021, 'The SEQC2 epigenomics quality control (EpiQC) study', Genome Biology, vol. 22, no. 1, 332, pp. 332. https://doi.org/10.1186/s13059-021-02529-2

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AU - Golda, Gosia

AU - Muszynska, Agata

AU - Łabaj, Paweł P.

AU - Campbell, Matthew A.

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AU - Liljedahl, Ulrika

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AU - Wang, Charles

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AU - Davis, Justin Wade

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AU - Liao, Will

AU - Xu, Joshua

AU - Hong, Huixiao

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AU - Tong, Weida

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AU - Mason, Christopher E.

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KW - Algorithms

KW - CpG Islands

KW - High-Throughput Nucleotide Sequencing

KW - Whole Genome Sequencing/methods

KW - Epigenome

KW - Genome, Human

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The SEQC2 epigenomics quality control (EpiQC) study

ASJC Scopus Subject Areas

Keywords

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