The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

Leming Shi; Wendell D. Jones; Roderick V. Jensen; Stephen C. Harris; Roger G. Perkins; Federico M. Goodsaid; Lei Guo; Lisa J. Croner; Cecilie Boysen; Hong Fang; Feng Qian; Shashi Amur; Wenjun Bao; Catalin C. Barbacioru; Vincent Bertholet; Xiaoxi Megan Cao; Tzu Ming Chu; Patrick J. Collins; Xiao Hui Fan; Felix W. Frueh; James C. Fuscoe; Xu Guo; Jing Han; Damir Herman; Huixiao Hong; Ernest S. Kawasaki; Quan Zhen Li; Yuling Luo; Yunqing Ma; Nan Mei; Ron L. Peterson; Raj K. Puri; Richard Shippy; Zhenqiang Su; Yongming Andrew Sun; Hongmei Sun; Brett Thorn; Yaron Turpaz; Charles Wang; Sue Jane Wang; Janet A. Warrington; James C. Willey; Jie Wu; Qian Xie; Liang Zhang; Lu Zhang; Sheng Zhong; Russell D. Wolfinger; Weida Tong

doi:10.1186/1471-2105-9-S9-S10

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

Leming Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu Ming Chu, Patrick J. Collins, Xiao Hui Fan, Felix W. FruehJames C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan Zhen Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Andrew Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Jane Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong

Research output: Contribution to journal › Article › peer-review

Original language	English
Article number	S10
Journal	BMC Bioinformatics
Volume	9
Issue number	SUPPL. 9
DOIs	https://doi.org/10.1186/1471-2105-9-S9-S10
State	Published - Aug 12 2008
Externally published	Yes

ASJC Scopus Subject Areas

Structural Biology
Biochemistry
Molecular Biology
Computer Science Applications
Applied Mathematics

Keywords

Gene Expression Profiling/methods
Genes/genetics
Oligonucleotide Array Sequence Analysis/methods
Data Interpretation, Statistical
Reproducibility of Results
Algorithms
Computer Simulation
Sensitivity and Specificity
Models, Genetic
Models, Statistical

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10.1186/1471-2105-9-S9-S10

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Shi, L., Jones, W. D., Jensen, R. V., Harris, S. C., Perkins, R. G., Goodsaid, F. M., Guo, L., Croner, L. J., Boysen, C., Fang, H., Qian, F., Amur, S., Bao, W., Barbacioru, C. C., Bertholet, V., Cao, X. M., Chu, T. M., Collins, P. J., Fan, X. H., ... Tong, W. (2008). The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinformatics, 9(SUPPL. 9), Article S10. https://doi.org/10.1186/1471-2105-9-S9-S10

Shi, L, Jones, WD, Jensen, RV, Harris, SC, Perkins, RG, Goodsaid, FM, Guo, L, Croner, LJ, Boysen, C, Fang, H, Qian, F, Amur, S, Bao, W, Barbacioru, CC, Bertholet, V, Cao, XM, Chu, TM, Collins, PJ, Fan, XH, Frueh, FW, Fuscoe, JC, Guo, X, Han, J, Herman, D, Hong, H, Kawasaki, ES, Li, QZ, Luo, Y, Ma, Y, Mei, N, Peterson, RL, Puri, RK, Shippy, R, Su, Z, Sun, YA, Sun, H, Thorn, B, Turpaz, Y, Wang, C, Wang, SJ, Warrington, JA, Willey, JC, Wu, J, Xie, Q, Zhang, L, Zhang, L, Zhong, S, Wolfinger, RD & Tong, W 2008, 'The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies', BMC Bioinformatics, vol. 9, no. SUPPL. 9, S10. https://doi.org/10.1186/1471-2105-9-S9-S10

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AU - Jones, Wendell D.

AU - Jensen, Roderick V.

AU - Harris, Stephen C.

AU - Perkins, Roger G.

AU - Goodsaid, Federico M.

AU - Guo, Lei

AU - Croner, Lisa J.

AU - Boysen, Cecilie

AU - Fang, Hong

AU - Qian, Feng

AU - Amur, Shashi

AU - Bao, Wenjun

AU - Barbacioru, Catalin C.

AU - Bertholet, Vincent

AU - Cao, Xiaoxi Megan

AU - Chu, Tzu Ming

AU - Collins, Patrick J.

AU - Fan, Xiao Hui

AU - Frueh, Felix W.

AU - Fuscoe, James C.

AU - Guo, Xu

AU - Han, Jing

AU - Herman, Damir

AU - Hong, Huixiao

AU - Kawasaki, Ernest S.

AU - Li, Quan Zhen

AU - Luo, Yuling

AU - Ma, Yunqing

AU - Mei, Nan

AU - Peterson, Ron L.

AU - Puri, Raj K.

AU - Shippy, Richard

AU - Su, Zhenqiang

AU - Sun, Yongming Andrew

AU - Sun, Hongmei

AU - Thorn, Brett

AU - Turpaz, Yaron

AU - Wang, Charles

AU - Wang, Sue Jane

AU - Warrington, Janet A.

AU - Willey, James C.

AU - Wu, Jie

AU - Xie, Qian

AU - Zhang, Liang

AU - Zhang, Lu

AU - Zhong, Sheng

AU - Wolfinger, Russell D.

AU - Tong, Weida

PY - 2008/8/12

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KW - Genes/genetics

KW - Oligonucleotide Array Sequence Analysis/methods

KW - Data Interpretation, Statistical

KW - Reproducibility of Results

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KW - Sensitivity and Specificity

KW - Models, Genetic

KW - Models, Statistical

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The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

ASJC Scopus Subject Areas

Keywords

Access to Document

OpenUrl availability

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